Deciphering the DNA Code of Neanderthal Man 188
smooth wombat writes "U.S. and German scientists have embarked on a two-year long project to map the genetic code of Neanderthal man. Their hope is to gain a greater understanding of how modern human brains evolved. This study comes after last years completion of mapping the DNA of chimpanzees, our closest living relative." From the article: "Over two years, the scientists aim to reconstruct a draft of the 3 billion building blocks of the Neanderthal genome -- working with fossil samples from several individuals. They face the complication of working with 40,000-year-old samples, and of filtering out microbial DNA that contaminated them after death. Only about 5 percent of the DNA in the samples is actually Neanderthal DNA, Egholm estimated, but he and Rothberg said pilot experiments had convinced them that the decoding was feasible."
Sheesh.. (Score:5, Funny)
ridiculous.
Everybody knows that the earth is only 27 years old. [diabolicalplan.com]
Re:Sheesh.. (Score:2)
Re:Sheesh.. (Score:2)
Re:Sheesh.. (Score:2)
But
Come to think of it, where am I now?
Re:Sheesh.. (Score:2)
Re:Living Neanderthals Exist (Score:2)
ad-word-tizzy (Score:3, Interesting)
Re:ad-word-tizzy (Score:2)
You might remember the Broad institute when they were the whitehead center for genome research - the people who sequenced a large (the largest?) part of the human genome. A number of people there seem to thin
Re:ad-word-tizzy (Score:2)
Welcome to the 21st century. That classification was made initially after the first described Neandertal (spelled nowadays without the H) Man fossil from the Neander valley ('Tal' is German for valley) near Düsseldorf, Germany, and dumped quickly after that. Neandertals were not larger than Homo sapiens, but shorter and more heavily built. Also, according to latest DNA studies, they were probably their own species rath
Sweet (Score:3, Funny)
It'll be great they can be all hairy and be pissed off at the world. Kinda reminds me of my neighbor...
Re:Sweet (Score:2)
Re:Sweet (Score:2)
And No... (Score:2, Funny)
Re:And No... (Score:2)
And that's why they are extinct.
Re:And No... (Score:3, Funny)
Re:And No... (Score:2)
Definitive post on Neandertal Decoding (Score:4, Interesting)
Re:Definitive post on Neandertal Decoding (Score:4, Interesting)
The other descriptions imply that it's contamination through questionable extraction techniques - they're grinding up the fossils, so ALL the DNA in the sample will be mixed together, and strands may well end up getting broken, making it much harder to sequence correctly.
Sequencing fossil DNA is certainly possible, and is extremely desirable, but the approach seems... odd. The BBC article, for example, claims that they're going to look for the genes that differentiate modern humans from neandertals, such as mental capacity. Given that we don't fully understand what "mental capacity" actually means, or indeed what mental capacity neandertals actually had, they would need to be looking for an unknown difference to identify an entirely theoretical and totally unquantifiable distinction. That's not good science.
Lastly, we know from studies of neandertal mtDNA that there was a large genetic diversity. Far larger than had been suspected, prior to that study. If these scientists are taking neandertal nucleic DNA from significantly different regions and/or times, they cannot be certain that the nucleic DNA had not evolved or otherwise differed to the point where direct comparison or simple in-lining of the genes would make no sense whatsoever.
This is a good research project, but I am highly uncertain of their methods and am not convinced it will yield meaningful results. Because repeat studies will be difficult to do, this is an area where those involved HAVE to take extra care to put their results beyond question. This care is NOT being taken, based on what I'm seeing.
Re:Definitive post on Neandertal Decoding (Score:2)
To the best of my knowledge (and things may have changed in the last two years) all sequencing is done in tiny chunks because we don't have the technology to accurately sequence long strands(by which I mean even thousands of base pairs, much less billions.) To deal with this, they sequence lots and lots of strands more or less rand
Re:Definitive post on Neandertal Decoding (Score:3, Interesting)
There is an added problem. Most geneticists use chain termination sequencing, which is good for fairly decent lengths of DNA. 454 uses pyrosequencing which is faster but only good for much smaller lengths. When the unknown elements may contain repeats of unk
Re:Definitive post on Neandertal Decoding (Score:2)
B: it makes me wonder if we couldn't use recombination with chopped-up human and chimp dna to show a lot of the differentiation. Fragment radiolabelled human DNA, mix with Neandertal, heat and anneal, then start looking at the overlap sequences. It'd work better and be more automated if there were markers on the human DNA as targets for some sort of ELISA or selective column adsorption. Hm. I miss biochem.
Re:Definitive post on Neandertal Decoding (Score:2)
Since you know the biochem side, you might want to write up a paper on how you'd go about this. At worst, you might easily get published, and journals pay very decently. At best, a biotech co
Re:Definitive post on Neandertal Decoding (Score:2)
Twelve times coverage was used for human DNA, to deal with repeats which are damn-near impossible to place using the shotgun method and chain termination in a single pass. With the added proble
This is going to end badly (Score:3, Funny)
Maybe scientists should get out more. First they sequence the Neanderthals DNA. Next, they'll be cloning one. Then the clone's start multiplying. Finally they take over the earth. Isn't this obvious to anyone else, or is it just me?
Re:This is going to end badly (Score:2, Funny)
Re:This is going to end badly (Score:2)
Re:This is going to end badly (Score:5, Interesting)
Dawkins' argument is that Moore's Law will eventually make the sequencing of genomes cheap enough to be routine. He speculates that a large database of hominid genomes plus expected advances in gene manipulation would support the creation of pre-human DNA. Once this is done, an implanted embryo with the new DNA could be inserted into a human womb, and out pops the new (old?) species. If Dawkins is correct, then other non-human species such as Neanderthals are also potentially viable.
In the essay, Dawkins briefly discusses the moral implications of such a task. He concludes that any objections are easily overcome by the great service to mankind in proving the correctness of the Theory of Evolution.
Re:This is going to end badly (Score:3, Insightful)
The female neanderthal's pelvis was extremely wide, which has led to speculation that their babies had a longer gestation period than humans (maybe 12 months), and were born bigger and less helpless. Even assuming the human host mother was going to deliver by C-section, I'm not sure you could delay birth that long.
But it's wild to imagine the problems it would cause for society. If you could produce beings from anywhere along the spectrum from animal to human, at what point do you let it vote? At what poin
Re:This is going to end badly (Score:2)
Depending on the political climate, whether or not it switched on either Fox or PBS.
Re:This is going to end badly (Score:2)
Re:This is going to end badly (Score:2)
Re:This is going to end badly (Score:2)
Re:This is going to end badly (Score:2)
"A spin-off benefit, which will perhaps have its greatest
impact in the United States, is that full knowledge of the
tree of life will make it even harder to doubt the fact of
evolution."
Here's another quote on the moral implications:
"'Pro life,' for example, in debates on abortion or stem
cell research, always means pro human life, fo
Re:This is going to end badly (Score:2)
It obviously will be able to register as a US Republican, no problem.
uh... (Score:2)
Well, you might be right. The environment has changed. The primary test of evolutionary fitness is now your ability to overcome birth control. You can do this via love of kids, religeous passion (Muslim or Catholic), or sheer stupidity. If the Neanderthals are even dumber than today's welfare moms, then they are more fit to survive.
Its slightly different to our own sequencing (Score:1)
Re:Its slightly different to our own sequencing (Score:2)
Well, given that neaderthal man had larger braincase, and either a same-size, to larger brain. And given that, given the shorter vocal box, and a larger nasal cavity, they had a higher, more nasal voice. And given that they were stockier , yet much stronger, then modern man...
What I see here is the rise of (possibly) highly intelligent, nasal, and strong individuals with thicker hair...
I for one welcome our new Jock-Nerd overloards...
Re:Its slightly different to our own sequencing (Score:2)
According to their digestive enzymes... (Score:5, Funny)
Re:According to their digestive enzymes... (Score:2)
Explanation (Score:3, Informative)
For those of you unAmerican types, or anyone who doesn't watch much TV, this is from a Geico auto insurance commercial [youtube.com].
panzee ? (Score:1)
I am wondering if the word "pansy" came from "chimpanzee" or vice versa ?
Re:panzee ? (Score:2)
After decoding (Score:2, Funny)
"We apologize for all the inconveniences"
Where do I download.... (Score:1)
Neanderthal Man went extinct because... (Score:3, Insightful)
Neanderthal man, on the contrary, sounded wimpy and nasal.
Neanderthals were hated by other humanoids, and were killed off due to their annoying, high-pitched voices.
See: http://en.wikipedia.org/wiki/Neandertal [wikipedia.org]
A recent study conducted on the Neanderthal hyoid found that due to the physical characteristics of Neanderthals and the fact that their larynx would have been stouter than that of the modern human, the average note emitted by Neanderthals would have been high pitched and sharper than that of modern man, contrary to the media stereotype of Neanderthals having ape-like grunts.
The base of the Neanderthal tongue was positioned higher in the throat, crowding the mouth somewhat. As a result, Neanderthal speech would most likely have been nasalized.
Re:Neanderthal Man went extinct because... (Score:2)
So, basically they would have sounded (or will sound) like this [orbitcast.com].
Re:Neanderthal Man went extinct because... (Score:2)
Yes, they also had a collection of hunting/gathering songs called - 'Sweatin' to the Ancients'
Re:Neanderthal Man went extinct because... (Score:2)
The thought occurs that you substituted "French" for "Neanderthals" and changed "killed off" to "killed" it would still be true.
Re:Neanderthal Man went extinct because... (Score:4, Interesting)
Nope, the average neanderthal had a bigger brain than the average human. However, both neanderthals and our own ancestors don't appear to have achieved any real level of culture until relatively recently in history; their artifacts don't show any specialization or innovation over tens of thousands of years, and they all come from local stone, indicating a lack of trade. The onset of culture didn't have anything to do with an increase in brain size (which didn't change over that short period). It may have had to do with something like the foxp2 [wikipedia.org] gene, which is crucial for developing complex language. It's possible to make up a lot of stories, and nobody knows which is right. It's possible, for example, that humans first crowded out neanderthals because we were skinnier and could survive on less food, and only later developed speech and culture.
Re:Neanderthal Man went extinct because... (Score:2)
From Wikipedia...
Their brain sizes have been estimated as larger than modern humans, but their brains may in fact have been approximately the same as those of modern humans.
I stand (upright) corrected.
Re:Neanderthal Man went extinct because... (Score:2)
If scientists find evidence of chair-flinging as a sport, this would truly explain a lot.
Re:Neanderthal Man went extinct because... (Score:2)
Basic human physiology, with a stouter body causes for quite a bit of internal heat production.
And also that the ice age was getting over at that precise period.
We being much thinner, can survive heat much better. These guys couldnt.
Since getting heat is easy (wear animal skins ?? ), but cooling off is not (no AC at that time)
Many factors..
Re:Neanderthal Man went extinct because... (Score:2)
Re:Neanderthal Man went extinct because... (Score:2)
Gene Pool (Score:2, Funny)
Re:Gene Pool (Score:2)
Spielberg already has the rights to... (Score:2)
(Yes, yes, I know, there were no hominids in the jurassic - it's a joke...)
Re:Spielberg already has the rights to... (Score:2)
Re:Spielberg already has the rights to... (Score:2)
Re:Spielberg already has the rights to... (Score:2)
Details (Score:4, Informative)
"A longstanding dispute among archaeologists is whether the modern humans who first entered Europe 45,000 years ago, ultimately from Africa, interbred with the Neanderthals or forced them into extinction. Interbreeding could have been genetically advantageous to the incoming humans, says Bruce Lahn, a geneticist at the University of Chicago, because the Neanderthals were well adapted to the cold European climate -- the last ice age had another 35,000 years to run -- and to local diseases.
Evidence from the human genome suggests some interbreeding with an archaic species, Dr. Lahn said, which could have been Neanderthals or other early humans."
Now, nobody really knows much at this point. But something that I found interesting was that, via John Hawks [johnhawks.net], "Neandertals will be within the human range of variation for most genes." And the "pilot experiments" Rothberg mentioned is a reference to how their team sequenced the DNA of the cave bear as a test-run. As I understand it this was mostly to convince museums that grinding up some of their prize Neanderthal fossils in the name of research was a good idea.
The cama. (Score:3, Interesting)
I have always had trouble understanding why some scientists flatly deny that interbreeding between
Re:The cama. (Score:2)
That's exactly why many don't buy it, actually. We know they lived basically side by side for tens of thousands of years in many places - in one location in particular for over
Re:Details (Score:2)
Something I've never heard explained: How exactly can we determine the specific origin of an allele of a gene?
Suppose there were a particular allele that arose as a mutation in one particular Neandertal, and it was sufficiently beneficial that it spread to the entire human species. How would we determine this? How would we
Re:Details (Score:2)
Even if an allele is found only in modern Europeans, and is also found in a Neandertal sample, how would we know where it originated? It could have been a mutation that happened 40,000 years ago in Europe, but how do we know which population produced it?
That's a good question. From breaking it down into 'when did an allele arise' and 'where did an allele arise' here some examples of how we can answe
Re:Details (Score:2)
If we were talking about the possibility that modern Europeans are, say, 30% Neandertal and 70% Cro Magnon, we might be able to do some sort of general population study. But that's not the situation. Nobody thinks the Neandertals could have contributed even 1% of modern European genes
Re:Details (Score:2)
But one of the stumbling blocks the scientists in this initial decode had to deal with was convincing museums that valuable research would come out of giving them Neanderthal bones to grind up and analyze. If things go as planned, I think it'll be easier for them to ask for more samples. And we've a fair number of rand
Re:Details (Score:2)
I've long thought it would be fun (if ultimately meaningless) to learn that, as a person with mostly European ancestry, I might be part Neandertal. It'd be even more fun to verify that they were among my personal ancestors. Then when someone called me a Neandert[h]al, I could say "How'd you know?" with an evil grin. But I'm not very hopeful that I'll ever know for sure.
Closest living relative? (Score:4, Funny)
I don't know about you guys but my closest living relative is probably my mother or maybe my father.
Re:Closest living relative? (Score:2)
Re:Closest living relative? (Score:2)
Re:Closest living relative? (Score:2)
Maybe if you're an only child. Otherwise it's your brother(s) and sister(s).
Uh, no. Genetically speaking (we were, weren't we?), you have 50% of your mother's and 50% of your father's genes. On average, though, you only share about 25% of a given sibling's genes. (Identical twins excluded, of course.) It's possible to share more or less than 25%, but less probable.
If you have kids, they're closer genetically to you (50%) than your s
Re: (Score:2)
Pigmy chimp (Score:3, Informative)
Re:Pigmy chimp (Score:3, Informative)
Nope. Chimps and bonobos form a clade together, and their common ancestor split off from our branch at the same time.
Re:Pigmy chimp (Score:2)
Sure? [anthropik.com]
CC.
Re:Pigmy chimp (Score:2)
That's an excellent article you referenced in support of your position. You must be new here.
Re:Pigmy chimp (Score:2)
Consider this phylogenetic tree:
|----------------- Gorilla
|
| |----------- Human
---------|
| |--- Common chimpanzee
|-------|
A Hearty DNA Welcome (Score:2, Funny)
An evil song (Score:2)
Re:An evil song (Score:2)
Now I'm a homo erectus
Got to connect this
Bone that I discovered yesterday.
A bit older than Neandertal, of course.
Results so predictable... (Score:2)
Bad metaphor (Score:2)
Re:I wish they would instead do something more use (Score:2, Funny)
I might suggest they have a look around my neighbor's house.
KFG
Re:I wish they would instead do something more use (Score:2)
It sounds like you've been suckered by the propaganda campaign of the Discovery Institute to convince the public that there is still a real debate among biologists regarding the validity of evolution.
The reality is that scientists are about as interested in looking for additional evidence to support evolution as physicists are in looking for additional evidence
Re:I wish they would instead do something more use (Score:2)
if they ever find the neantherthal DNA, if it exists.
Of course it exists. And its still in the gene pool. Haven't you seen all those people with unibrows? :-)
On a side note - check out all the actors who have plucked their unibrows. Salma Hayek, Colin Farrell, Angie Harmon ...
http://en.wikipedia.org/wiki/Monobrow [wikipedia.org]
Re:I wish they would instead do something more use (Score:5, Informative)
You can read about neanderthals from a number of different sites, wikipedia [wikipedia.org] has a pretty decent page, as does talkorigins [talkorigins.org] on hominid evolution in general. Reconstructing the neanderthal genome will be of great interest to science and medicine. Based on the morphology of the fossil remains and their location chronologically, evolution makes some very specific predictions about what that reconstructed genome should look like. It should be highly similar to modern H. sapiens sapiens, much more so than the couple of percent difference between our genome and chimps. If it isn't, then the theory of evolution has a very bad problem. There will not be any spin about it one way or another from the scientific community--just facts and reasonable interpretation. The neanderthal genome, if reconstructed, will also be informative on some issues such as whether or not they interbreed with H. sapiens sapiens, time of divergence with the same, and may also provide highly detailed information about their ability to speak and possibly higher brain function, which will likely be of medical interest.
No, what'll be more "histericcal" is how leading Intelligent Design pushers/Creationists will spin yet another blow to their superstition.
Re:I wish they would instead do something more use (Score:2)
*mammoths*. That'd rock so very, very much.
In a bro
Re:I wish they would instead do something more use (Score:3, Informative)
Just like they did with the Piltdown Man [wikipedia.org]?
Re:I wish they would instead do something more use (Score:2)
Re:I wish they would instead do something more use (Score:2)
Re:I wish they would instead do something more use (Score:2)
Re:I wish they would instead do something more use (Score:2)
Re:I wish they would instead do something more use (Score:2)
My study of biology in college has taught me that species designation means exactly nothing in determining w
Re:I wish they would instead do something more use (Score:2)
Re:I wish they would instead do something more use (Score:2)
Re:I wish they would instead do something more use (Score:2)
The ability to interbreed (and the firtility of any offspring
Re:I wish they would instead do something more use (Score:2)
I think you're confused. At this point everything found in biology is usually interpreted within the context of evolution. But to say that everything therefore provides support for evolution is a circular argument. Phenomena are interpreted within the context of evolution because the case for evolution was successfully made long ago. If A implies B, and you therefore deduce B because you know A, you can't then use B to go back and bolster t
Re:I'm confused (Score:2)